Fluorescense in-situ hybridisation image of Acinetobacter spp. surviving high concentrations of antibiotics.
Sample and image: Dr. Niculina Musat, ProVIS, UFZ
Sample and image: Dr. Niculina Musat, ProVIS, UFZ
Helium-ion micrograph of a vero cell infected with Sars-CoV2 virusses.
Sample: Prof. Dr. Uwe G. Liebert, Universität Leipzig. Image: Dr. Matthias Schmidt, ProVIS, UFZ.
Sample: Prof. Dr. Uwe G. Liebert, Universität Leipzig. Image: Dr. Matthias Schmidt, ProVIS, UFZ.
Carbon (red) and nitrogen (blue) assimilation activity in a microbial biofilm (green) visualised by nanoSIMS.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Nanostructure on the eye of a moth as seen by helium-ion microscopy.
Image: Dr. Matthias Schmidt, ProVIS, UFZ.
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Image: Dr. Matthias Schmidt, ProVIS, UFZ.
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TiOx (yellow) and Ti (blue) in calcinated guava seed as seen by ToF-SIMS.
Sample: Dr. María P. Elizalde (BUAP, Mexico). Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. María P. Elizalde (BUAP, Mexico). Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Tracing freshly-assimilated carbon (red) and nitrogen (blue) in a micro-algal biofilm with nanoSIMS.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Sample: Dr. Kim Milferstedt. Image: Dr. Hryhoriy Stryhanyuk, ProVIS, UFZ.
Scanning electron micrograph of roots in soil overlaid with chemical maps obtained from energy-dispersive X-ray spectroscopy.
Sample & Image: Dr. Chaturanga Bandara, Dr. Matthias Schmidt, ProVIS, UFZ.
Sample & Image: Dr. Chaturanga Bandara, Dr. Matthias Schmidt, ProVIS, UFZ.
Bacteria in rhizosphere soil detected by catalyzed reporter deposition fluorescense in-situ hybridisation.
Sample & Image: Dr. Chaturanga Bandara, Dr. Niculina Musat
Sample & Image: Dr. Chaturanga Bandara, Dr. Niculina Musat
Spatial distribution of bromoxynil measured in a sagittal section of a zebrafish embryo by MALDI-FT-ICR MS.
Sample and Image: Sophia Leippe, University
Sample and Image: Sophia Leippe, University
ProVIS
Centre for Chemical Microscopy
The ProVIS - Centre for Chemical Microscopy is an unique research platform that combines high resolution structural and chemical imaging with high resolution mass spectrometry for metabolomics, proteomics and metallomics. The mission of ProVIS is to identify and characterize (bio)-chemical processes driven by microorganisms in soil, water, plants, human tissue and blood.
ProVIS provides access to scientific instrumentation and laboratory facilities with expert guidance and support to enable collaborative and multidisciplinary research. We welcome users from academia and industry.
Your Experiment in ProVIS
Procedure for running an experiment at ProVIS:
- Contact us and discuss your idea with a group leader group leader
- Fill and sign the application form and send it to isobiosek@ufz.de
- Await notification of approval or rejection from scientific panel in ProVIS within the following month.
Expert Groups and Equipment
The core technique of the group is Fluorescence in situ hybridization (FISH) for cell identification.
Instrumentation
- epifluorescence microscope Zeiss Axio Imager Z2
laser microdissection system
- Bruker SolariX 12T FT-ICR mass spectrometer
- Bruker Autoflex Speed MALDI-ToF mass spectrometer
Instrumentation
Zeiss Merlin VP Compact
Field-emitting scanning electron microscope with Bruker Quantax XFlash Flat Quad energy-dispersive X-ray spectrometer.
- high-resolution imaging (SE, BSE, STEM)
- elemental nano-analytics
Zeiss Orion NanoFab
Scanning helium ion microscope equipped with electron-flood gun for charge compensation and gas-injection system.
- high-resolution imaging (SE detection)
- nano-fabrication (ion-milling with He or Ne)
WITec Alpha 300RA
Confocal Raman microscope with AFM. Excitation: solid state lasers 532nm, 785nm and He-Ne laser. Equipped with True Surface option.
- acquisition of Raman spectra
- chemical mapping
- high-resolution atomic force microscopy
Contact
Dr. Matthias Schmidt
matthias.schmidt@ufz.de
+49 341 235 1358
Instrumentation
- Cameca nanoSIMS 50L sector-field secondary ion mass spectrometer
- IONTOF ToF.SIMS.5 time-of-flight secondary ion mass spectrometer
Contact
Dr. Hryhoriy Stryhanyuk
gregory.stryhanyuk@ufz.de
+49 341 235 1359
- High-resolution mass spectrometry of peptides and proteins (global analysis or gel-bands)
- Analysis of peptide derivatization
- Analysis of isotope incorporation into peptides
- Instrument: LC-MS/MS (Orbitrap Fusion) coupled via an Advion
- We are happy to measure in scientific cooperations but we also offer commercial analyses. Do not hesitate to contact us (lorenz.adrian@ufz.de) if you are interested.
Instrumentation
- Neptune Multiple-collector inductively coupled plasma mass spectrometry (Neptune MC-ICPMS, Thermo Fisher Scientific) with Trace 1310 GC (gas chromatography, Thermo Fisher Scientific)
Contact
Dr. Matthias Gehre
matthias.gehre@ufz.de
+ 49 (0) 341 235 1361
Dr. Steffen Kümmel
steffen.kuemmel@ufz.de
+ 49 (0) 341 235 1362
Sample Preparation and Storage:
- Leica EM CPD300 critical point drier
- Leica EM SCD 500 sputter-coater
- Leica EM HPM100 high-pressure freezer
- Leica EM GP plunge freezer
- Leica EM AFS2+EM FSP freeze substitution system
- Leica EM UC7 ultra-microtome
- Leica VT1200S vibratome
- tec-lab liquid nitrogen sample storage
Light Microscopy:
- 2x Leica M205 FA light microscope
- Zeiss Observer.Z1 AXIO+PALM laser microdissection system
- Zeiss Imager.Z2 AXIO fluorescence microscope (3D stacks)
- Sensofar SNeox 3D optical profilometer with Nanosurf LensAFM
- WITec Raman microscope with AFM
Electron and Helium Ion Microscopy
- Zeiss Merlin VP scanning electron microscope (STEM, cryo-SEM, EDX)
- Zeiss Orion NanoFab (ion-beam imaging, charge compensation, nano-structuring)
Mass Spectrometry:
- ION-ToF ToF.SIMS5 SIMS microprobe (cryo stage)
- Cameca nanoSIMS 50L SIMS microprobe
- SPECTRO-MS ICP-MS double-focussing sector field mass-spectrometer
- Photon Machines 193nm excimer laser (material ablation for ICP-MS)
- Bruker autoflex speed MALDI-ToF
- Bruker solariX XR ultra-high resolution Fourier transform ion cyclotron mass spectrometer
- Thermo Scientific NEPTUNE multicollector ICP-MS
- Thermo Scientific Orbitrap Fusion proteomics mass spectrometer hyphenated to a nanoHPLC via an Advion NanoMate
- Correlia, an ImageJ plug-in for the cp-registration of multimodal correlative microscopy data-sets.
www.ufz.de/correlia
- identification of microorganisms by fluorescent labeling (FISH and CARD-FSIH)
- sample preparation of biological specimens for microscopic techniques, including correlative approaches using cryo- or chemical fixation and resin embedding and ultra-thin sectioning.
- sample preparation of microbial samples for single cell analyses
- isotope labeling experiments
- protein-stable isotope probing (SIP)
- compound-specific isotope analysis (CSIA) of δ37Cl, δ33S and δ34S in organic compounds
- stable isotope analysis for forensic questions
- isotope fractionation for the characterization of biogeochemical processes
- correlative microscopy and 2D image registration
- high-resolution imaging of biological specimens with light, electrons and ions
- surface modification
- high-resolution surface analytics
- micro-analysis of geological specimen
- microbe-root-soil interplay in the rhizosphere
- microbial mediated corrosion
- effects and fate of antibiotics in environmental compartments
- microbial ecosystems (predatory bacteria, bacteriophages, phototroph-heterotroph)
- investigation of the fate of organic chemicals in the environment
- assessment of in situ transformation and (bio)degradation of organic compounds by stable isotope fractionation
- elucidation of transformation pathways of organic compounds by stable isotope analytics
- isotope forensics
- incorporation of chemicals into the biomass of microorganisms
- investigation of metabolic pathways
- determination of protein expression patterns, protein modification and derivatization
Index:
- 2026 (1)
- 2025 (3)
- 2024 (7)
- 2023 (7)
- 2022 (9)
- 2021 (32)
- 2020 (26)
- 2019 (20)
- 2018 (23)
- 2017 (19)
- 2016 (16)
- 2015 (10)
- 2014 (2)
You could use our publication index for further requests.
2026 (1)
- Rocha Vogel, A., Swonarjow, S., Schmidt, M., Walker, G., von Tümpling, W. (2026):
From roads to water organisms? – Sequential extraction indicates high bioavailability of Cd, Zn and Pb from tire and road wear particles from a highway tunnel and go-kart tracks
Sci. Total Environ. 1012 , art. 181231
10.1016/j.scitotenv.2025.181231
2025 (3)
- Min, N., Yao, J., Li, H., Kümmel, S., Schaefer, T., Herrmann, H., Richnow, H.H. (2025):
Carbon, hydrogen, nitrogen and chlorine isotope fractionation during 3-chloroaniline transformation in aqueous environments by direct photolysis, TiO2 photocatalysis and hydrolysis
Water Res. 273 , art. 122956
10.1016/j.watres.2024.122956 - Rodrigues Matos, R., Craig, A., Koch, B.P., Hawkes, J., Moodie, L.W.K., Ivanova, A., Gleixner, G., Guth, P., Knorr, K.-H., Tebben, J., Reemtsma, T., Zherebker, A., Lechtenfeld, O.J. (2025):
Functional group distribution shapes chemical properties of degraded terrestrial and marine dissolved organic matter
Environ. Sci. Technol. 59 (49), 26539 - 26549
10.1021/acs.est.5c01998 - Veit, M.C., Stauder, R., Bai, Y., Gabhrani, R., Schmidt, M., Klähn, S., Lai, B. (2025):
The necessity of multi-parameter normalization in cyanobacterial research: A case study of the PsbU in Synechocystis sp. PCC 6803 using CRISPRi
J. Biol. Chem. 301 (11), art. 110763
10.1016/j.jbc.2025.110763
2024 (7)
- Cioni, L., Nikiforov, V., Benskin, J.P., Coêlho, A.C.M.F., Dudášová, S., Lauria, M.Z., Lechtenfeld, O.J., Plassmann, M.M., Reemtsma, T., Sandanger, T.M., Herzke, D. (2024):
Combining advanced analytical methodologies to uncover suspect PFAS and fluorinated pharmaceutical contributions to extractable organic fluorine in human serum (Tromsø Study)
Environ. Sci. Technol. 58 (29), 12943 - 12953
10.1021/acs.est.4c03758 - Köhne, M., Hüsch, R., Tönissen, A., Schmidt, M., Müsken, M., Böttcher, D., Hirnet, J., Plötz, M., Kittler, S., Sieme, H. (2024):
Isolation and characterization of bacteriophages specific to Streptococcus equi subspecies zooepidemicus and evaluation of efficacy ex vivo
Front. Microbiol. 15 , art. 1448958
10.3389/fmicb.2024.1448958 - Lechtenfeld, O.J., Kaesler, J., Jennings, E.K., Koch, B.P. (2024):
Direct analysis of marine dissolved organic matter using LC-FT-ICR MS
Environ. Sci. Technol. 58 (10), 4637 - 4647
10.1021/acs.est.3c07219 - Liu, Y., Rohwerder, T., Bonatelli, M.L., von Postel, T., Kleinsteuber, S., Adrian, L., Ding, C. (2024):
A novel sulfatase for acesulfame degradation in wastewater treatment plants as evidenced from Shinella strains
Environ. Sci. Technol. 58 (42), 18892 - 18902
10.1021/acs.est.4c02283 - Rodrigues Matos, R., Jennings, E.K., Kaesler, J., Reemtsma, T., Koch, B.P., Lechtenfeld, O.J. (2024):
Post column infusion of internal standard to LC-FT-ICR MS enables semi-quantitative comparison of dissolved organic matter in original samples
Analyst 149 (12), 3468 - 3478
10.1039/D4AN00119B - Wang, Q., Lechtenfeld, O.J., Rietvelt, L.C., Schuster, J., Ernst, M., Hofman-Caris, R., Kaesler, J., Wang, C., Yang, M., Yu, J., Zietzschmann, F. (2024):
How aromatic dissolved organic matter differs in competitiveness against organic micropollutant adsorption
Environ. Sci. Ecotechnol. 21 , art. 100392
10.1016/j.ese.2024.100392 - Zhu, M., Liu, Y., He, Y., Kuemmel, S., Wu, L., Shen, D., Richnow, H.H. (2024):
Multi-element (2H, 13C, 37Cl) isotope analysis to characterize reductive transformation of α-, β-, γ-, and δ-HCH isomers by cobalamin and Fe0 nanoparticles
J. Hazard. Mater. 480 , art. 135932
10.1016/j.jhazmat.2024.135932
2023 (7)
- Bandara, C.D., Schmidt, M., Davoudpour, Y., Stryhanyuk, H., Richnow, H.H., Musat, N. (2023):
Corrigendum: Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context
Front. Plant Sci. 13 , art. 1125001
10.3389/fpls.2022.1125001 - Grosch Schroeder, B., İstanbullu, H.B., Schmidt, M., Logroño, W., Harms, H., Nikolausz, M. (2023):
Effect of alkaline and mechanical pretreatment of wheat straw on methanogenic enrichment cultures from Pachnoda marginata larva gut
Fermentation 9 (1), art. 60
10.3390/fermentation9010060 - Herzsprung, P., Kamjunke, N., Wilske, C., Friese, K., Boehrer, B., Rinke, K., Lechtenfeld, O.J., von Tümpling, W. (2023):
Data evaluation strategy for identification of key molecular formulas in dissolved organic matter as proxies for biogeochemical reactivity based on abundance differences from ultrahigh resolution mass spectrometry
Water Res. 232 , art. 119672
10.1016/j.watres.2023.119672 - Höflich, K., Hobler, G., Allen, F.I., Wirtz, T., Rius, G., McElwee-White, L., Krasheninnikov, A.V., Schmidt, M., Utke, I., Klingner, N., Osenberg, M., Córdoba, R., Djurabekova, F., Manke, I., Moll, P.J.W., Manoccio, M., De Teresa, J.M., Bischoff, L., Michler, J., De Castro, O., Delobbe, A., Dunne, P., Dobrovolskiy, O.V., Frese, N., Gölzhäuser, A., Mazarov, P., Koelle, D., Möller, W., Pérez-Murano, F., Philipp, P., Vollnhals, F., Hlawacek, G. (2023):
Roadmap for focused ion beam technologies
Appl. Phys. Rev. 10 (4), art. 041311
10.1063/5.0162597 - Jennings, E.K., Sierra Olea, M., Kaesler, J.M., Hübner, U., Reemtsma, T., Lechtenfeld, O.J. (2023):
Stable isotope labeling for detection of ozonation byproducts in effluent organic matter with FT-ICR-MS
Water Res. 229 , art. 119477
10.1016/j.watres.2022.119477 - Lechtenfeld, O., Kaesler, J.M., Jennings, E., Koch, B.P. (2023):
Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) data of original arctic ocean seawater (AO) and peat pore water (PPW)
Data Investigation Portal UFZ
10.48758/ufz.14331 - Lohse, M., Santangeli, M., Steininger-Mairinger, T., Oburger, E., Reemtsma, T., Lechtenfeld, O.J., Hann, S. (2023):
The effect of root hairs on exudate composition: a comparative non-targeted metabolomics approach
Anal. Bioanal. Chem. 415 (5), 823 - 840
10.1007/s00216-022-04475-9
2022 (9)
- Arandia-Gorostidi, N., Berthelot, H., Calabrese, F., Stryhanyuk, H., Klawonn, I., Iversen, M., Nahar, N., Grossart, H.-P., Ploug, H., Musat, N. (2022):
Efficient carbon and nitrogen transfer from marine diatom aggregates to colonizing bacterial groups
Sci. Rep. 12 , art. 14949
10.1038/s41598-022-18915-0 - Kaniowska, D., Wenk, K., Rademacher, P., Weiss, R., Fabian, C., Schulz, I., Guthardt, M., Lange, F., Greiser, S., Schmidt, M., Braumann, U.-D., Emmrich, F., Koehl, U., Jaimes, Y. (2022):
Extracellular vesicles of mesenchymal stromal cells can be taken up by microglial cells and partially prevent the stimulation induced by β-amyloid
Stem Cell Rev. Rep. 18 (3), 1113 - 1126
10.1007/s12015-021-10261-4 - Pertzborn, D., Arolt, C., Ernst, G., Lechtenfeld, O.J., Kaesler, J., Pelzel, D., Guntinas-Lichius, O., von Eggeling, F., Hoffmann, F. (2022):
Multi-class cancer subtyping in salivary gland carcinomas with MALDI imaging and deep learning
Cancers 14 (17), art. 4342
10.3390/cancers14174342 - Phillips, E., Bulka, O., Picott, K., Kümmel, S., Edwards, E., Nijenhuis, I., Gehre, M., Dworatzek, S., Webb, J., Sherwood Lollar, B. (2022):
Investigation of active site amino acid influence on carbon and chlorine isotope fractionation during reductive dechlorination
FEMS Microbiol. Ecol. 98 (8), fiac072
10.1093/femsec/fiac072 - Scarabotti, F., Bühler, K., Schmidt, M., Harnisch, F. (2022):
Thickness and roughness of transparent gold-palladium anodes have no impact on growth kinetics and yield coefficients of early-stage Geobacter sulfurreducens biofilms
Bioelectrochemistry 144 , art. 108043
10.1016/j.bioelechem.2021.108043 - Schmidt, M. (2022):
Hochaufgelöste Mikrobenporträts mit hoher Tiefenschärfe [High resolution microbe portraits with large depth-of-field]
Biospektrum 28 (4), 377 - 380
10.1007/s12268-022-1772-z - Tamisier, M., Schmidt, M., Vogt, C., Kümmel, S., Stryhanyuk, H., Musat, N., Richnow, H.-H., Musat, F. (2022):
Iron corrosion by methanogenic archaea characterized by stable isotope effects and crust mineralogy
Environ. Microbiol. 24 (2), 583 - 595
10.1111/1462-2920.15658 - You, X., Kallies, R., Kühn, I., Schmidt, M., Harms, H., Chatzinotas, A., Wick, L.Y. (2022):
Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
ISME J. 16 (5), 1275 - 1283
10.1038/s41396-021-01155-x - Zherebker, A., Rukhovich, G.D., Sarycheva, A., Lechtenfeld, O.J., Nikolaev, E.N. (2022):
Aromaticity index with improved estimation of carboxyl group contribution for biogeochemical studies
Environ. Sci. Technol. 56 (4), 2729 - 2737
10.1021/acs.est.1c04575
2021 (32)
- Bandara, C.D., Schmidt, M., Davoudpour, Y., Stryhanyuk, H., Richnow, H.H., Musat, N. (2021):
Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context
Front. Plant Sci. 12 , art. 668929
10.3389/fpls.2021.668929 - Budhraja, R., Karande, S., Ding, C., Ullrich, M.K., Wagner, S., Reemtsma, T., Adrian, L. (2021):
Characterization of membrane-bound metalloproteins in the anaerobic ammonium-oxidizing bacterium “Candidatus Kuenenia stuttgartiensis” strain CSTR1
Talanta 223 (Part 2), art. 121711
10.1016/j.talanta.2020.121711 - Calabrese, F., Stryhanyuk, H., Moraru, C., Schlömann, M., Wick, L.Y., Richnow, H.H., Musat, F., Musat, N. (2021):
Metabolic history and metabolic fitness as drivers of anabolic heterogeneity in isogenic microbial populations
Environ. Microbiol. 23 (11), 6764 - 6776
10.1111/1462-2920.15756 - Chakaroun, R.M., Massier, L., Heintz-Buschart, A., Said, N., Fallmann, J., Crane, A., Schütz, T., Dietrich, A., Blüher, M., Stumvoll, M., Musat, N., Kovacs, P. (2021):
Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery
Genome Med. 13 , art. 105
10.1186/s13073-021-00919-6 - Chen, S.-C., Budhraja, R., Adrian, L., Calabrese, F., Stryhanyuk, H., Musat, N., Richnow, H.-H., Duan, G.-L., Zhu, Y.-G., Musat, F. (2021):
Novel clades of soil biphenyl degraders revealed by integrating isotope probing, multi-omics, and single-cell analyses
ISME J. 15 (12), 3508 - 3521
10.1038/s41396-021-01022-9 - da Silva, M.P., Blaurock, K., Beudert, B., Fleckenstein, J.H., Hopp, L., Peiffer, S., Reemtsma, T., Lechtenfeld, O.J. (2021):
Delineating source contributions to stream dissolved organic matter composition under baseflow conditions in forested headwater catchments
J. Geophys. Res.-Biogeosci. 126 (8), e2021JG006425
10.1029/2021JG006425 - da Silva, M.P., Kaesler, J.M., Reemtsma, T., Lechtenfeld, O.J. (2021):
Correction to Absorption mode spectral processing improves data quality of natural organic matter analysis by Fourier-transform ion cyclotron resonance mass spectrometry (J. Am. Soc. Mass Spectrom. (2020) 31: 7 (1615-1618) DOI: 10.1021/jasms.0c00138)
J. Am. Soc. Mass Spectrom. 32 (9), 2495
10.1021/jasms.1c00236 - Decelle, J., Veronesi, G., LeKieffre, C., Gallet, B., Chevalier, F., Stryhanyuk, H., Marro, S., Ravanel, S., Tucoulou, R., Schieber, N., Finazzi, G., Schwab, Y., Musat, N. (2021):
Subcellular architecture and metabolic connection in the planktonic photosymbiosis between Collodaria (radiolarians) and their microalgae
Environ. Microbiol. 23 (11), 6569 - 6586
10.1111/1462-2920.15766 - Eziuzor, S.C., Schmidt, M., Vogt, C. (2021):
Anaerobic benzene mineralization by natural microbial communities from Niger Delta
Biodegradation 32 (1), 37 - 52
10.1007/s10532-020-09922-x - Fazia, S., Amalfitano, S., Venturi, S., Pacini, N., Vazquez, S., Olaka, L.A., Tassi, F., Crognale, S., Herzsprung, P., Lechtenfeld, O.J., Cabassi, J., Capecchiacci, F., Rossetti, S., Yakimov, M.M., Vaselli, O., Harper, D.M., Butturini, A. (2021):
High concentrations of dissolved biogenic methane associated with cyanobacterial blooms in East African lake surface water
Commun. Biol. 4 , art. 845
10.1038/s42003-021-02365-x - Giannopoulos, K., Benettoni, P., Holbrook, T.R., Reemtsma, T., Wagner, S., Lechtenfeld, O.J. (2021):
Direct analysis of fulvic acids adsorbed onto capped gold nanoparticles by laser desorption ionization Fourier-transform ion cyclotron resonance mass spectrometry
Environ. Sci.-Nano 8 (8), 2336 - 2346
10.1039/d0en01253j - Han, L., Kaesler, J., Peng, C., Reemtsma, T., Lechtenfeld, O.J. (2021):
Online counter gradient LC-FT-ICR-MS enables detection of highly polar natural organic matter fractions
Anal. Chem. 93 (3), 1740 - 1748
10.1021/acs.analchem.0c04426 - Hensgens, G., Lechtenfeld, O.J., Guillemette, F., Laudon, H., Berggren, M. (2021):
Impacts of litter decay on organic leachate composition and reactivity
Biogeochemistry 154 , 99 - 117
10.1007/s10533-021-00799-3 - Herzsprung, P., Kamjunke, N., von Tümpling, W., Wilske, C., Reemtsma, T., Lechtenfeld, O.J. (2021):
Judgement and assessment of high resolution mass spectrometry investigations of DOM – Examples for identification of biogeochemical processes in waters
Vom Wasser 119 (2), 47 - 51
10.1002/vomw.202100009 - Kruse, S., Türkowsky, D., Birkigt, J., Matturro, B., Franke, S., Jehmlich, N., von Bergen, M., Westermann, M., Rossetti, S., Nijenhuis, I., Adrian, L., Diekert, G., Goris, T. (2021):
Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
ISME J. 15 (6), 1794 - 1809
10.1038/s41396-020-00887-6 - Liu, X., Li, W., Kümmel, S., Merbach, I., Sood, U., Gupta, V., Lal, R., Richnow, H.H. (2021):
Soil from a hexachlorocyclohexane contaminated field site inoculates wheat in a pot experiment to facilitate the microbial transformation of β-hexachlorocyclohexane examined by compound-specific isotope analysis
Environ. Sci. Technol. 55 (20), 13812 - 13821
10.1021/acs.est.1c03322 - Liu, X., Wu, L., Kümmel, S., Richnow, H.H. (2021):
Characterizing the biotransformation of hexachlorocyclohexanes in wheat using compound-specific stable isotope analysis and enantiomer fraction analysis
J. Hazard. Mater. 406 , art. 124301
10.1016/j.jhazmat.2020.124301 - Lohse, M., Haag, R., Lippold, E., Vetterlein, D., Reemtsma, T., Lechtenfeld, O.J. (2021):
Direct imaging of plant metabolites in the rhizosphere using laser desorption ionization ultra-high resolution mass spectrometry
Front. Plant Sci. 12 , art. 753812
10.3389/fpls.2021.753812 - Muniz, M.S., Halbach, K., Araruna, I.C.A., Martins, R.X., Seiwert, B., Lechtenfeld, O., Reemtsma, T., Farias, D. (2021):
Moxidectin toxicity to zebrafish embryos: Bioaccumulation and biomarker responses
Environ. Pollut. 283 , art. 117096
10.1016/j.envpol.2021.117096 - Neubert, K., Schmidt, M., Harnisch, F. (2021):
Platinized titanium as alternative cost-effective anodes for the efficient Kolbe electrolysis in aqueous electrolyte solutions
ChemSusChem 14 (15), 3097 - 3109
10.1002/cssc.202100854 - Nguyen, A.V., Lai, B., Adrian, L., Krömer, J.O. (2021):
The anoxic electrode-driven fructose catabolism of Pseudomonas putida KT2440
Microb. Biotechnol. 14 (4), 1784 - 1796
10.1111/1751-7915.13862 - Ouyang, W.-Y., Birkigt, J., Richnow, H.H., Adrian, L. (2021):
Anaerobic transformation and detoxification of sulfamethoxazole by sulfate-reducing enrichments and Desulfovibrio vulgaris
Environ. Sci. Technol. 55 (1), 271 - 282
10.1021/acs.est.0c03407 - Rummel, C.D., Lechtenfeld, O.J., Kallies, R., Benke, A., Herzsprung, P., Rynek, R., Wagner, S., Potthoff, A., Jahnke, A., Schmitt-Jansen, M. (2021):
Conditioning film and early biofilm succession on plastic surfaces
Environ. Sci. Technol. 55 (16), 11006 - 11018
10.1021/acs.est.0c07875 - Sartori Jeunon Gontijo, E., Herzsprung, P., Lechtenfeld, O.J., de Castro Bueno, C., Barth, J.A.C., Rosa, A.H., Friese, K. (2021):
Multi-proxy approach involving ultrahigh resolution mass spectrometry and self-organising maps to investigate the origin and quality of sedimentary organic matter across a subtropical reservoir
Org. Geochem. 151 , art. 104165
10.1016/j.orggeochem.2020.104165 - Schmidt, M., Byrne, J.M., Maasilta, I.J. (2021):
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mSystems 6 (1), e01175-20
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Comparative proteomics unravelled the hexachlorocyclohexane (HCH) isomers specific responses in an archetypical HCH degrading bacterium Sphingobium indicum B90A
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Electron inventory of the iron-sulfur scaffold complex HypCD essential in [NiFe]-hydrogenase cofactor assembly
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Cytoklepty in the plankton: A host strategy to optimize the bioenergetic machinery of endosymbiotic algae
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New insights into the seasonal variation of DOM quality of a humic-rich drinking-water reservoir—coupling 2D-fluorescence and FTICR MS measurements
Water 13 (12), art. 1703
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Surface cleaning and sample carrier for complementary high-resolution imaging techniques
Biointerphases 15 (2), art. 021005
10.1116/1.5143203 - Butturini, A., Amalfitano, S., Herzsprung, P., Lechtenfeld, O.J., Venturi, S., Olaka, L.A., Pacini, N., Harper, D.M., Tassi, F., Fazi, S. (2020):
Dissolved organic matter in continental hydro-geothermal systems: Insights from two hot springs of the East African Rift Valley
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Dissolved organic matter in a tropical saline-alkaline lake of the East African Rift Valley
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Absorption mode spectral processing improves data quality of natural organic matter analysis by Fourier-transform ion cyclotron resonance mass spectrometry
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10.1021/jasms.0c00138 - Davoudpour, Y., Schmidt, M., Calabrese, F., Richnow, H.H., Musat, N. (2020):
High resolution microscopy to evaluate the efficiency of surface sterilization of Zea Mays seeds
PLOS One 15 (11), e0242247
10.1371/journal.pone.0242247 - Decelle, J., Veronesi, G., Gallet, B., Stryhanyuk, H., Benettoni, P., Schmidt, M., Tucoulou, R., Passarelli, M., Bohic, S., Clode, P., Musat, N. (2020):
Subcellular chemical imaging: New avenues in cell biology
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10.1016/j.tcb.2019.12.007 - Deobald, D., Hanna, R., Shahryari, S., Layer, G., Adrian, L. (2020):
Identification and characterization of a bacterial core methionine synthase
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Comparative genomics and proteomics in "Candidatus Kuenenia stuttgartiensis" reveal high genomic plasticity in the overall genome structure, CRISPR loci and surface proteins
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Dual element (C/Cl) isotope analysis indicates distinct mechanisms of reductive dehalogenation of chlorinated ethenes and dichloroethane in Dehalococcoides mccartyi strain BTF08 with defined reductive dehalogenase inventories
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Exploring the potential of laser desorption ionization time-of-flight mass spectrometry to analyse organic capping agents on inorganic nanoparticle surfaces
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Improved understanding of dissolved organic matter processing in freshwater using complementary experimental and machine learning approaches
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10.1021/acs.est.0c02383 - Hund-Rinke, K., Sinram, T., Schlich, K., Nickel, C., Dickehut, H.P., Schmidt, M., Kühnel, D. (2020):
Attachment efficiency of nanomaterials to algae as an important criterion for ecotoxicity and grouping
Nanomaterials 10 (6), art. 1021
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Quality of dissolved organic matter driven by autotrophic and heterotrophic microbial processes in a large river
Water 12 (6), art. 1577
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Simultaneous compound-specific analysis of δ33S and δ34S in organic compounds by GC-MC-ICPMS using medium- and low-mass-resolution modes
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Transcriptomic and proteomic responses of the organohalide-respiring bacterium Desulfoluna spongiiphila to growth with 2,6-dibromophenol as the electron acceptor
Appl. Environ. Microb. 86 (5), e02146-19
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Compound-specific isotope analysis and enantiomer fractionation to characterize the transformation of hexachlorocyclohexane isomers in a soil–wheat pot system
Environ. Sci. Technol. 54 (14), 8690 - 8698
10.1021/acs.est.9b07609 - Liu, Y., Kümmel, S., Yao, J., Nijenhuis, I., Richnow, H.-H. (2020):
Dual C–Cl isotope analysis for characterizing the anaerobic transformation of α, β, γ, and δ-hexachlorocyclohexane in contaminated aquifers
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Dual C–Cl isotope analysis for characterizing the reductive dechlorination of α- and γ-hexachlorocyclohexane by two Dehalococcoides mccartyi strains and an enrichment culture
Environ. Sci. Technol. 54 (12), 7250 - 7260
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Online nano solid phase extraction Fourier-transform ion cyclotron resonance mass spectrometry workflow to analyze small scale gradients of soil solution organic matter in the rhizosphere
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Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
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In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics
Renew. Agr. Food Syst. 35 (2), 206 - 214
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Validation of a field deployable reactor for in situ formation of NOM-engineered nanoparticle corona
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Interlaboratory comparison of humic substances compositional space as measured by Fourier transform ion cyclotron resonance mass spectrometry (IUPAC Technical Report)
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Refinement of compound aromaticity in complex organic mixtures by stable isotope label assisted ultrahigh-resolution mass spectrometry
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Identification of nanoparticles and their localization in algal biofilm by 3D-imaging secondary ion mass spectrometry
J. Anal. At. Spectrom. 34 (6), 1098 - 1108
10.1039/c8ja00439k - Budhraja, R., Ding, C., Walter, P., Wagner, S., Reemtsma, T., Sawers, R.G., Adrian, L. (2019):
The impact of species, respiration type, growth phase and genetic inventory on absolute metal content of intact bacterial cells
Metallomics 11 (5), 925 - 935
10.1039/C9MT00009G - Chen, S.-C., Musat, N., Lechtenfeld, O.J., Paschke, H., Schmidt, M., Said, N., Popp, D., Calabrese, F., Stryhanyuk, H., Jaekel, U., Zhu, Y.-G., Joye, S.B., Richnow, H.-H., Widdel, F., Musat, F. (2019):
Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep
Nature 568 (7750), 108 - 111
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An essential thioredoxin-type protein of Trypanosoma brucei acts as redox-regulated mitochondrial chaperone
PLoS Pathog. 15 (9), e1008065
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Algal remodeling in a ubiquitous planktonic photosymbiosis
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Quantifying a biocatalytic product from a few living microbial cells using microfluidic cultivation coupled to FT-ICR-MS
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Elemental imaging (LA-ICP-MS) of zebrafish embryos to study the toxicokinetics of the acetylcholinesterase inhibitor naled
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10.1007/s00216-018-1471-2 - Horst, A., Bonifacie, M., Bardoux, G., Richnow, H.H. (2019):
Isotopic characterization (2H, 13C, 37Cl, 81Br) of abiotic degradation of methyl bromide and methyl chloride in water and implications for future studies
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10.1021/acs.est.9b02165 - Kallies, R., Kiesel, B., Schmidt, M., Ghanem, N., Zopfi, J., Hackermüller, J., Harms, H., Wick, L.Y., Chatzinotas, A. (2019):
Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6
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2H and 13C isotope fractionation analysis of organophosphorus compounds for characterizing transformation reactions in biogas slurry: Potential for anaerobic treatment of contaminated biomass
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Toward improved accuracy in chlorine isotope analysis: Synthesis routes for in-house standards and characterization via complementary mass spectrometry methods
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Investigation of architecture development and phosphate distribution in Chlorella biofilm by complementary microscopy techniques
FEMS Microbiol. Ecol. 95 (4), fiz029
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Bioprocess development for lantibiotic ruminococcin-A production in Escherichia coli and kinetic insights into LanM enzymes catalysis
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10.3389/fmicb.2019.02133 - Ouyang, W.-Y., Su, J.-Q., Richnow, H.H., Adrian, L. (2019):
Identification of dominant sulfamethoxazole-degraders in pig farm-impacted soil by DNA and protein stable isotope probing
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Have an ion on it: the life-cycle of Bdellovibrio bacteriovorus viewed by helium-ion microscopy
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2D liquid chromatographic fractionation with ultra-high resolution MS analysis resolves a vast molecular diversity of tropospheric particle organics
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Relationship between discharge and river plastic concentrations in a rural and an urban catchment
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A concept for studying the transformation reaction of Hexachlorocyclohexanes in food webs using multi-element compound-specific isotope analysis
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Comparative analysis of uranium bioassociation with halophilic bacteria and archaea
PLOS One 13 (1), e0190953
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Comparative secretome analyses of human and zoonotic Staphylococcus aureus isolates CC8, CC22, and CC398
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Imaging organic-mineral aggregates formed by Fe(II)-oxidizing bacteria using helium ion microscopy
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Syntrophic partners enhance growth and respiratory dehalogenation of hexachlorobenzene by Dehalococcoides mccartyi strain CBDB1
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Identification of a unique Radical SAM methyltransferase required for the sp3-C-methylation of an arginine residue of methyl-coenzyme M reductase
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Characterizing chemical transformation of organophosphorus compounds by 13C and 2H stable isotope analysis
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A new strategy for accelerated extraction of target compounds using molecularly imprinted polymer particles embedded in a paper-based disk
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Multistage bioassociation of uranium onto an extremely halophilic archaeon revealed by a unique combination of spectroscopic and microscopic techniques
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10.1016/j.jhazmat.2016.12.053 - Bastida, F., Torres, I.F., Andrés-Abellán, M., Baldrian, P., López-Mondéjar, R., Větrovský, T., Richnow, H.H., Starke, R., Ondoño, S., García, C., López-Serrano, F., Jehmlich, N. (2017):
Differential sensitivity of total and active soil microbial communities to drought and forest management
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10.1111/gcb.13790 - Böhme, S., Baccaro, M., Schmidt, M., Potthoff, A., Stärk, H.-J., Reemtsma, T., Kühnel, D. (2017):
Metal uptake and distribution in the zebrafish (Danio rerio) embryo: differences between nanoparticles and metal ions
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10.1039/c6en00440g - Frauenstein, D., Seidel, K., Adrian, L. (2017):
SandTraps are efficient, scalable, and mild systems for harvesting, washing and concentrating cells
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Heterogenic response of prokaryotes toward silver nanoparticles and ions is facilitated by phenotypes and attachment of silver aggregates to cell surfaces
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A H2-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1
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The glyceraldehyde-3-phosphate dehydrogenase GapDH of Corynebacterium diphtheriae is redox-controlled by protein S-mycothiolation under oxidative stress
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10.1038/s41598-017-05206-2 - Horst, A., Renpenning, J., Richnow, H.-H., Gehre, M. (2017):
Compound specific stable chlorine isotopic analysis of volatile aliphatic compounds using gas chromatography hyphenated with multiple collector inductively coupled plasma mass spectrometry
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10.1021/acs.analchem.7b01875 - Kadisch, M., Julsing, M.K., Schrewe, M., Jehmlich, N., Scheer, B., von Bergen, M., Schmid, A., Bühler, B. (2017):
Maximization of cell viability rather than biocatalyst activity improves whole-cell ω-oxyfunctionalization performance
Biotechnol. Bioeng. 114 (4), 874 - 884
10.1002/bit.26213 - Kallies, R., Kiesel, B., Schmidt, M., Kacza, J., Ghanem, N., Narr, A., Zopfi, J., Wick, L.Y., Hackermüller, J., Harms, H., Chatzinotas, A. (2017):
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies
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10.1186/s40793-017-0235-5 - Laufer, K., Nordhoff, M., Halama, M., Martinez, R.E., Obst, M., Nowak, M., Stryhanyuk, H., Richnow, H.H., Kappler, A. (2017):
Microaerophilic Fe(II)-oxidizing Zetaproteobacteria isolated from low-Fe marine coastal sediments: Physiology and compostition of their twisted stalks
Appl. Environ. Microb. 83 (8), e03118-16
10.1128/AEM.03118-16 - Morling, K., Raeke, J., Kamjunke, N., Reemtsma, T., Tittel, J. (2017):
Tracing aquatic priming effect during microbial decomposition of terrestrial dissolved organic carbon in chemostat experiments
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10.1007/s00248-017-0976-0 - Mortan, S.H., Martín-González, L., Vicent, T., Caminal, G., Nijenhuis, I., Adrian, L., Marco-Urrea, E. (2017):
Detoxification of 1,1,2-trichloroethane to ethene in a bioreactor co-culture of Dehalogenimonas and Dehalococcoides mccartyi strains
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Photochemically induced bound residue formation of carbamazepine with dissolved organic matter
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Linking the mobilization of dissolved organic matter in catchments and its removal in drinking water treatment to its molecular characteristics
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10.1016/j.watres.2017.01.066 - Taubert, M., Grob, C., Howar, A.M., Burns, O.J., Pratscher, J., Jehmlich, N., von Bergen, M., Richnow, H.H., Chen, Y., Murrell, J.C. (2017):
Methylamine as a nitrogen source for microorganisms from a coastal marine environment
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10.1111/1462-2920.13709 - Warnke, M., Jacoby, C., Jung, T., Agne, M., Mergelsberg, M., Starke, R., Jehmlich, N., von Bergen, M., Richnow, H.-H., Brüls, T., Boll, M. (2017):
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids
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Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
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Validation of GC–IRMS techniques for δ13C and δ2H CSIA of organophosphorus compounds and their potential for studying the mode of hydrolysis in the environment
Anal. Bioanal. Chem. 409 (10), 2581 - 2590
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2016 (16)
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The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment
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The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
Mol. Ecol. 25 (18), 4660 - 4673
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Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
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Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
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Thermophilic archaea activate butane via alkyl-coenzyme M formation
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In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model
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Selectivity of solid phase extraction of freshwater dissolved organic matter and its effect on ultrahigh resolution mass spectra
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Functional micelles formed by branched polymeric surfactants: synthesis, characteristics, and application as nanoreactors and carriers
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Location and speciation of gadolinium and yttrium in roots of Zea mays by LA-ICP-MS and ToF-SIMS
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10.1016/j.envpol.2016.05.069 - Schaubeck, M., Clavel, T., Calasan, J., Lagkouvardos, I., Haange, S.B., Jehmlich, N., Basic, M., Dupont, A., Hornef, M., von Bergen, M., Bleich, A., Haller, D. (2016):
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
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Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
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Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene
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ATP-dependent C–F bond cleavage allows the complete degradation of 4-fluoroaromatics without oxygen
mBio 7 (4), e00990-16
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Sunlight photolysis of benzotriazoles – Identification of transformation products and pathways
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Complete nitrification by Nitrospira bacteria
Nature 528 (7583), 504 - 509
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Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
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Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
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Heterologous complementation studies in Escherichia coli with the Hyp accessory protein machinery from Chloroflexi provide insight into [NiFe]-hydrogenase large subunit recognition by the HypC protein family
Microbiology-(UK) 161 (11), 2204 - 2219
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Stable carbon isotope fractionation during 1,2-dichloropropane-to-propene transformation by an enrichment culture containing Dehalogenimonas strains and a dcpA gene
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Cyanate as an energy source for nitrifiers
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Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds
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In situ analysis of a silver nanoparticle-precipitating Shewanella biofilm by surface enhanced confocal Raman microscopy
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Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis
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Reductive dehalogenation of oligocyclic phenolic bromoaromatics by Dehalococcoides mccartyi strain CBDB1
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2014 (2)
- Musat, N., Stryhanyuk, H., Bombach, P., Adrian, L., Audinot, J.-N., Richnow, H.H. (2014):
The effect of FISH and CARD-FISH on the isotopic composition of 13C- and 15N-labeled Pseudomonas putida cells measured by nanoSIMS
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10.1016/j.syapm.2014.02.002 - Schiffmann, C.L., Jehmlich, N., Otto, W., Hansen, R., Nielsen, P.H., Adrian, L., Seifert, J., von Bergen-Tomm, M. (2014):
Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
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Bandara, Dr. Chaturanga, Bandara, Chaturanga
Davoudpour, Dr. Yalda
Musat, Dr. Niculina, Musat, Niculina
Schwab, Dr. Laura, Schwab, Laura